rs13487383 SNP Detail

Summary

• ID
  rs13487383
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:135040621 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTCAGCAC TTGGACAAGA
  TAATGACCTT TCCTCAGCAA CGTGAACCCT ACTCGGGGCC AACTCTCTTC CTGCTTGGTG
  GAAATTCTAC ATATGTACAG TAAGCCGGTG TGGGACCATA GGAAGGGGCA TGCTTTGCCC
  ACCACCAGCT ATGGGAGCCT GCGTGGGCTA GGGGAGGCGG GGTATCTGGG AGCCTGGCAA
  Y
  ACCACTGCGC ATGAAGGCTC ATGCACATCT CTCTCTCCTG TTCTCTCTCT CTCCCTTTCT
  CCCTCTCCCC ACACCTCTCC ATTGTCTTCC CTCTCCATTG GCTTCACTAT GGCGGCCAGA
  CCCAGCCACC ACTCAGAGAT TAGGCGACTC TTCCCTCAAG CCCAGATTCA GACCGTGCCT
  AACGCTGGCC ACTGGGTCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20402704	PS02180507	PERLEGEN	MM_PANEL	f	SNP	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/HeJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13487383					SNP	T	T	T	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135040621 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Abhd11	abhydrolase domain containing 11			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Abhd11os	abhydrolase domain containing 11, opposite strand			419 bp downstream
Cpgi16736	CpG island 16736			1593 bp distal
Gm43372	predicted gene 43372			1659 bp upstream
Gm73578	predicted gene, 73578			220 bp downstream
Rr622228	regulatory region 622228			1143 bp proximal
Rr622229	regulatory region 622229			1146 bp proximal
Rr622230	regulatory region 622230			1421 bp proximal
Rr622231	regulatory region 622231			1522 bp proximal
Rr622232	regulatory region 622232			1649 bp proximal
Rr622233	regulatory region 622233			1773 bp proximal
Tssr1661	transcription start site region 1661			1735 bp downstream
Tssr1662	transcription start site region 1662			960 bp downstream
Tssr1663	transcription start site region 1663			1392 bp downstream
Tssr1664	transcription start site region 1664			1410 bp downstream
Tssr49125	transcription start site region 49125			1991 bp downstream
Tssr49126	transcription start site region 49126			1922 bp downstream
Tssr49127	transcription start site region 49127			1866 bp downstream
Tssr49128	transcription start site region 49128			1753 bp downstream
Tssr53717	transcription start site region 53717			979 bp downstream
Tssr53718	transcription start site region 53718			995 bp downstream
Tssr53719	transcription start site region 53719			1045 bp downstream
Tssr53720	transcription start site region 53720			1090 bp downstream
Tssr53721	transcription start site region 53721			1347 bp downstream
Tssr53722	transcription start site region 53722			1364 bp downstream