rs13487384 SNP Detail

Summary

• ID
  rs13487384
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  121
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135040804 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTCTTCCCT CTCCATTGGC TTCACTATGG CGGCCAGACC
  CAGCCACCAC TCAGAGATTA GGCGACTCTT CCCTCAAGCC CAGATTCAGA CCGTGCCTAA
  M
  GCTGGCCACT GGGTCCACAG CGACAAACCC CAAGACTTCA TGGATGCTGT CACCAGCTTC
  TTGGCTTAAG AAGTAGCTCC TTGGAAGAGC AGCCAGGGGA                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20402705	PS02180509	PERLEGEN	MM_PANEL	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13487384					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135040804 () rs orientation: forward

Symbol	Name	Function Class
Abhd11	abhydrolase domain containing 11	within coordinates
Abhd11os	abhydrolase domain containing 11, opposite strand	236 bp downstream
Cpgi16736	CpG island 16736	1776 bp distal
Gm43372	predicted gene 43372	1842 bp upstream
Gm73578	predicted gene, 73578	37 bp downstream
Rr110217	regulatory region 110217	797 bp proximal
Rr110218	regulatory region 110218	1197 bp proximal
Rr124503	regulatory region 124503	803 bp distal
Rr124504	regulatory region 124504	within coordinates
Tssr1661	transcription start site region 1661	1918 bp downstream
Tssr1662	transcription start site region 1662	777 bp downstream
Tssr1663	transcription start site region 1663	1209 bp downstream
Tssr1664	transcription start site region 1664	1227 bp downstream
Tssr49128	transcription start site region 49128	1936 bp downstream
Tssr53717	transcription start site region 53717	796 bp downstream
Tssr53718	transcription start site region 53718	812 bp downstream
Tssr53719	transcription start site region 53719	862 bp downstream
Tssr53720	transcription start site region 53720	907 bp downstream
Tssr53721	transcription start site region 53721	1164 bp downstream
Tssr53722	transcription start site region 53722	1181 bp downstream