rs13487386 SNP Detail

Summary

• ID
  rs13487386
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135041827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGGGATTC TGGGTTCTGT
  TGGGGAGTGA TGGATGAGGA GGCAGTGACC TGGGGCTTGT CAGAAGGAGA AGCCTCACCC
  TGGGTCCTTC TGCCCTGCCT CTGCCCTGCC TCATGCTATT TCCACTCAGT TTTACCACCC
  TTTGCCTCCA GGGGGTGCTG CGCCGGCATC TTGTAAAGGA GACCCTTAGT CTGGCTAGCC
  S
  GGAAGTAGAC TATGGGACTT TGCAGAATGG ACAGTGTTTG AAGCTCCTGA GGAGAAAGGA
  GTTCCCACAC AGCCCTACAG AAATGCTACT GAGTGCTCTG GAGTCGCTTA CCTTTCTATG
  AGCTTAGAGA GTCAAGGCCT GGTGACTGAG ACTTGTCAGT TGGTAGAGGC TAGAAGACAG
  AGCCCTTTGC CCTTCCAGGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20402707	PS02180513	PERLEGEN	MM_PANEL	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13487386					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135041827 () rs orientation: forward

Symbol	Name	Function Class
Abhd11	abhydrolase domain containing 11	798 bp downstream
Abhd11os	abhydrolase domain containing 11, opposite strand	185 bp upstream
Gm73578	predicted gene, 73578	within coordinates
Rr110217	regulatory region 110217	27 bp distal
Rr110218	regulatory region 110218	174 bp proximal
Rr110219	regulatory region 110219	1974 bp proximal
Rr124503	regulatory region 124503	1826 bp distal
Rr124504	regulatory region 124504	within coordinates
Tssr1662	transcription start site region 1662	236 bp upstream
Tssr1663	transcription start site region 1663	186 bp downstream
Tssr1664	transcription start site region 1664	204 bp downstream
Tssr53717	transcription start site region 53717	212 bp upstream
Tssr53718	transcription start site region 53718	165 bp upstream
Tssr53719	transcription start site region 53719	150 bp upstream
Tssr53720	transcription start site region 53720	105 bp upstream
Tssr53721	transcription start site region 53721	141 bp downstream
Tssr53722	transcription start site region 53722	158 bp downstream