rs13487387 SNP Detail

Summary

• ID
  rs13487387
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135041875 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGGGCTT GTCAGAAGGA
  GAAGCCTCAC CCTGGGTCCT TCTGCCCTGC CTCTGCCCTG CCTCATGCTA TTTCCACTCA
  GTTTTACCAC CCTTTGCCTC CAGGGGGTGC TGCGCCGGCA TCTTGTAAAG GAGACCCTTA
  GTCTGGCTAG CCGGGAAGTA GACTATGGGA CTTTGCAGAA TGGACAGTGT TTGAAGCTCC
  Y
  GAGGAGAAAG GAGTTCCCAC ACAGCCCTAC AGAAATGCTA CTGAGTGCTC TGGAGTCGCT
  TACCTTTCTA TGAGCTTAGA GAGTCAAGGC CTGGTGACTG AGACTTGTCA GTTGGTAGAG
  GCTAGAAGAC AGAGCCCTTT GCCCTTCCAG GCAAGGCACT CCCTAGCAGA CTCCACCTAC
  AGGAGGACAG CCTGGGGCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20402708	PS02180514	PERLEGEN	MM_PANEL	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13487387					SNP	T	T	T	T	T	T	T	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135041875 () rs orientation: forward

Symbol	Name	Function Class
Abhd11	abhydrolase domain containing 11	846 bp downstream
Abhd11os	abhydrolase domain containing 11, opposite strand	233 bp upstream
Gm73578	predicted gene, 73578	within coordinates
Rr110217	regulatory region 110217	75 bp distal
Rr110218	regulatory region 110218	126 bp proximal
Rr110219	regulatory region 110219	1926 bp proximal
Rr124503	regulatory region 124503	1874 bp distal
Rr124504	regulatory region 124504	within coordinates
Tssr1662	transcription start site region 1662	284 bp upstream
Tssr1663	transcription start site region 1663	138 bp downstream
Tssr1664	transcription start site region 1664	156 bp downstream
Tssr53717	transcription start site region 53717	260 bp upstream
Tssr53718	transcription start site region 53718	213 bp upstream
Tssr53719	transcription start site region 53719	198 bp upstream
Tssr53720	transcription start site region 53720	153 bp upstream
Tssr53721	transcription start site region 53721	93 bp downstream
Tssr53722	transcription start site region 53722	110 bp downstream