rs13487388 SNP Detail

Summary

• ID
  rs13487388
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135042010 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTTG GTAGAGGCTA GAAGACAGAG
  M
  CCTTTGCCCT TCCAGGCAAG GCACT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	NZW/LacJ	SPRET/EiJ
ss20402709	PS02180516	PERLEGEN	MM_PANEL	f	SNP	C	C	C	A	C	C	A
SNP Consensus Information
SNP					Consensus Type	A/HeJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	NZW/LacJ	SPRET/EiJ
rs13487388					SNP	C	C	C	A	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135042010 () rs orientation: forward

Symbol	Name	Function Class
Abhd11	abhydrolase domain containing 11	981 bp downstream
Abhd11os	abhydrolase domain containing 11, opposite strand	368 bp upstream
Gm73578	predicted gene, 73578	within coordinates
Rr110217	regulatory region 110217	210 bp distal
Rr110218	regulatory region 110218	within coordinates
Rr110219	regulatory region 110219	1791 bp proximal
Rr124504	regulatory region 124504	within coordinates
Tssr1662	transcription start site region 1662	419 bp upstream
Tssr1663	transcription start site region 1663	3 bp downstream
Tssr1664	transcription start site region 1664	21 bp downstream
Tssr53717	transcription start site region 53717	395 bp upstream
Tssr53718	transcription start site region 53718	348 bp upstream
Tssr53719	transcription start site region 53719	333 bp upstream
Tssr53720	transcription start site region 53720	288 bp upstream
Tssr53721	transcription start site region 53721	31 bp upstream
Tssr53722	transcription start site region 53722	within coordinates