rs13487389 SNP Detail

Summary

• ID
  rs13487389
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135042781 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGCTTACC ATTTTATTTT
  TTTTGTTTTG TTTTGTTTTG TTTTGTTTTT CAAGACAGGG TTTCTCTATG TCACCCCGGT
  TATCCTCTGT AGATCAGGCT GGCCTTGAAC TCAGAGACCC ACCTACCTCT GCCTTCTGAA
  TGCTGGGAAT AAAGGCGTGC GCCTCCACCG CCTGGTTCAT TACCAATAGC TTGAATCCCA
  Y
  CTTACCTTTA TGCTGTTACT AGTATACCCC AAACACGCAG TGCCTGGGAA GCAGTCTAAC
  TGAACTCAGC ATTTCCAAGC TGAGGGACTT TTGTTTGTTT TGAGATAGGG CTTCTCTGTG
  AGACACCACT GCTTGACTCT AAAATGACCA CCAATCCATA TTGGAAATAG AAAAATACTT
  TTGAGATTTT GAGCATCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20402710	PS02180518	PERLEGEN	MM_PANEL	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13487389					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135042781 () rs orientation: forward

Symbol	Name	Function Class
Abhd11	abhydrolase domain containing 11	1752 bp downstream
Abhd11os	abhydrolase domain containing 11, opposite strand	1139 bp upstream
Gm73578	predicted gene, 73578	525 bp upstream
Rr110217	regulatory region 110217	981 bp distal
Rr110218	regulatory region 110218	within coordinates
Rr110219	regulatory region 110219	1020 bp proximal
Rr124504	regulatory region 124504	580 bp distal
Tssr1662	transcription start site region 1662	1190 bp upstream
Tssr1663	transcription start site region 1663	757 bp upstream
Tssr1664	transcription start site region 1664	723 bp upstream
Tssr53717	transcription start site region 53717	1166 bp upstream
Tssr53718	transcription start site region 53718	1119 bp upstream
Tssr53719	transcription start site region 53719	1104 bp upstream
Tssr53720	transcription start site region 53720	1059 bp upstream
Tssr53721	transcription start site region 53721	802 bp upstream
Tssr53722	transcription start site region 53722	769 bp upstream