rs13487390 SNP Detail

Summary

• ID
  rs13487390
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135042862 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCTCTGTA GATCAGGCTG
  GCCTTGAACT CAGAGACCCA CCTACCTCTG CCTTCTGAAT GCTGGGAATA AAGGCGTGCG
  CCTCCACCGC CTGGTTCATT ACCAATAGCT TGAATCCCAT CTTACCTTTA TGCTGTTACT
  AGTATACCCC AAACACGCAG TGCCTGGGAA GCAGTCTAAC TGAACTCAGC ATTTCCAAGC
  Y
  GAGGGACTTT TGTTTGTTTT GAGATAGGGC TTCTCTGTGA GACACCACTG CTTGACTCTA
  AAATGACCAC CAATCCATAT TGGAAATAGA AAAATACTTT TGAGATTTTG AGCATCTCTT
  TTGTTGTTGT TTATTTGTTT TTGGTTTTCT CTGTATAGCC CTGGCTGTCC TGGACCTCAC
  TCTGTAGACC AGGCTGGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20402711	PS02180519	PERLEGEN	MM_PANEL	f	SNP	T	T	T	T	T	T	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13487390					SNP	T	T	T	T	T	T	T	T	C	T	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135042862 () rs orientation: forward

Symbol	Name	Function Class
Abhd11	abhydrolase domain containing 11	1833 bp downstream
Abhd11os	abhydrolase domain containing 11, opposite strand	1220 bp upstream
Gm73578	predicted gene, 73578	606 bp upstream
Rr110217	regulatory region 110217	1062 bp distal
Rr110218	regulatory region 110218	62 bp distal
Rr110219	regulatory region 110219	939 bp proximal
Rr124504	regulatory region 124504	661 bp distal
Tssr1662	transcription start site region 1662	1271 bp upstream
Tssr1663	transcription start site region 1663	838 bp upstream
Tssr1664	transcription start site region 1664	804 bp upstream
Tssr53717	transcription start site region 53717	1247 bp upstream
Tssr53718	transcription start site region 53718	1200 bp upstream
Tssr53719	transcription start site region 53719	1185 bp upstream
Tssr53720	transcription start site region 53720	1140 bp upstream
Tssr53721	transcription start site region 53721	883 bp upstream
Tssr53722	transcription start site region 53722	850 bp upstream