rs13487819 SNP Detail

Summary

• ID
  rs13487819
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:135330823 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGTAAAG ATCCAAGCTT
  AGAAGAAAGA TTCAGGTATT AGAGAAGCCT GGGTGGAAGG TGGAAAGGTG GGAACAAACA
  TCTCCCAGAG CAATTTTCAA GCTGGGCAGA AAGTGGTTCC TTTTAAGAGA AACCAAACCA
  AAGCCTCAGT GCACTTCCCA GGCAAGGAAG AGGGACTGAG CAGCCTGGGC CTATGGGAAA
  S
  CAGCAGGTAC CGGTGGAGAA TCCTGCAGTG TTCTGGAGGC AGAACAGGCA GCAGCAAGAT
  GCAGCCCAGA CCACTGTACC AGAGTGGGCA GAGGTCAGAG GCAGACCTAG CATGTGGGCC
  CTGAACTGCC ATCAGGTGAC CGGGGTGAAA GTCAGCAGCT GTCAAGAGTC TTGTCAGGGT
  AGAGAAGCTA GCACCAGCCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20403140	PS02181236	PERLEGEN	MM_PANEL	f	SNP	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13487819					SNP	C	C	C	C	C	G	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135330823 () rs orientation: forward

Symbol	Name	Function Class
Fkbp6	FK506 binding protein 6	Intron
Rr622311	regulatory region 622311	669 bp proximal