rs13487821 SNP Detail

Summary

• ID
  rs13487821
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:135331381 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGAAAAGT CAAAAGACTT
  GGTAAGATAT TTGAAAAGTC CTTAAGGAGA CAGAGATTTA AAAGGAAAAT ATTTTCTGTG
  TTAGAAATGG AACACAATGA TGCAATGTAT CTGGATCCCG TATGATTTTG TTTCGCTTAT
  TAACATACAA GTAATTTTTT TCAGTAACAA TTACAGTTTT ACATACCCTT TTTAAAAGTG
  W
  TCAGAAGGAG ACTTACAGAA GGAAAAATTA AATGTTAGAG TGGAGGCAAT AAAAATGGGG
  TTGGAAAATC CTCTGAAGAA CAGATCTCAG AGGAATGCAA TCTAAAGCCT AAGCCGCCAC
  CTTTTGTAAG ATTGCAGAAT GGCAGTCTAT TAGATTCCTC AGATTTCTGC TGAGTTAAGA
  GTACACTTTA CATTTGAAGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20403142	PS02181240	PERLEGEN	MM_PANEL	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13487821					SNP	T	T	T	T	T	T	T	T	T	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135331381 () rs orientation: forward

Symbol	Name	Function Class
Fkbp6	FK506 binding protein 6	Intron
Rr622311	regulatory region 622311	111 bp proximal