rs13487822 SNP Detail

Summary

• ID
  rs13487822
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  121
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:135331551 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTCTGAAGA ACAGATCTCA GAGGAATGCA ATCTAAAGCC
  TAAGCCGCCA CCTTTTGTAA GATTGCAGAA TGGCAGTCTA TTAGATTCCT CAGATTTCTG
  Y
  TGAGTTAAGA GTACACTTTA CATTTGAAGC CATCTTAGGG CAATGTCTTA AGTAGCTATG
  TATTGCGTTT TGTACAGTTT GAAAATGTAA AATATGTCCA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20403143	PS02181241	PERLEGEN	MM_PANEL	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13487822					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135331551 () rs orientation: forward

Symbol	Name	Function Class
Fkbp6	FK506 binding protein 6	Intron
Rr622311	regulatory region 622311	38 bp distal