rs13488567 SNP Detail

Summary

• ID
  rs13488567
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  121
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135658699 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCACTCCGT GAGAGGAAAC AAACCccttc cttccttcct
  tccttccttc cttccttcct tccttccttc ctccctccct cccttccttc cttccttAAG
  K
  TGTTACTGTC ATAGCATCAA GAAAAGTAAG GAACAGCCtg gtggtggtgg tggtggtggc
  acacaccttt aatcccagca ctcggaaggc agaagcaggc                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20403905	PS02182546	PERLEGEN	MM_PANEL	f	SNP	G	G	G	G	G	G	G	G	T	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13488567					SNP	G	G	G	G	G	G	G	G	T	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135658699 () rs orientation: forward

Symbol	Name	Function Class
Rr399417	regulatory region 399417	897 bp downstream
Rr622386	regulatory region 622386	1065 bp distal
Rr622387	regulatory region 622387	459 bp distal
Rr622388	regulatory region 622388	717 bp proximal
Rr622389	regulatory region 622389	953 bp proximal