rs13488569 SNP Detail

Summary

• ID
  rs13488569
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135659203 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTCTCATT GAAGCCAAAT
  AGAGTGAGAT AGCTGGCCTA TCTCTCTTCA CACTGCCTCT GCCTCTTTTA CTGTCTCAAC
  CTTAGCATGG GGTTCTACTG GCCTCTGTGT GGAAGCAAGC TGTTTTGTTG AATAATGCAA
  GGATAACATG AATAGACTTC CCTTCAAGGC TTTCTTCCTG GCACCGTGAC TGTAAATAGC
  R
  GACCGTGAAC ATGCATCAGA AGAGTAAGCA GAGAACACAG GATTAACACT GGGGGGGGGG
  GGGGGGGCTC CTCCAGGGTA TAAAGGCGCT TGCTGCCAAG CTTGCTGATC TAAGTTTGAT
  CCCGAAGACC TACAAGGGAT GAAACGTGAT GAAACCATTT CTAGATTTAG CTCAAGAATA
  AACTCTTAGA AACAAGAGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20403907	PS02182551	PERLEGEN	MM_PANEL	f	SNP	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13488569					SNP	A	A	A	A	A	A	A	A	G	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135659203 () rs orientation: forward

Symbol	Name	Function Class
Rr399417	regulatory region 399417	1401 bp downstream
Rr622386	regulatory region 622386	1569 bp distal
Rr622387	regulatory region 622387	963 bp distal
Rr622388	regulatory region 622388	213 bp proximal
Rr622389	regulatory region 622389	449 bp proximal
Rr622390	regulatory region 622390	1867 bp proximal