rs13488570 SNP Detail

Summary

• ID
  rs13488570
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135659216 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAAATAGA GTGAGATAGC
  TGGCCTATCT CTCTTCACAC TGCCTCTGCC TCTTTTACTG TCTCAACCTT AGCATGGGGT
  TCTACTGGCC TCTGTGTGGA AGCAAGCTGT TTTGTTGAAT AATGCAAGGA TAACATGAAT
  AGACTTCCCT TCAAGGCTTT CTTCCTGGCA CCGTGACTGT AAATAGCAGA CCGTGAACAT
  R
  CATCAGAAGA GTAAGCAGAG AACACAGGAT TAACACTGGG GGGGGGGGGG GGGGCTCCTC
  CAGGGTATAA AGGCGCTTGC TGCCAAGCTT GCTGATCTAA GTTTGATCCC GAAGACCTAC
  AAGGGATGAA ACGTGATGAA ACCATTTCTA GATTTAGCTC AAGAATAAAC TCTTAGAAAC
  AAGAGCTGTG GTTTGTGCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20403908	PS02182553	PERLEGEN	MM_PANEL	f	SNP	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13488570					SNP	G	G	G	G	G	G	G	G	A	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135659216 () rs orientation: forward

Symbol	Name	Function Class
Rr399417	regulatory region 399417	1414 bp downstream
Rr622386	regulatory region 622386	1582 bp distal
Rr622387	regulatory region 622387	976 bp distal
Rr622388	regulatory region 622388	200 bp proximal
Rr622389	regulatory region 622389	436 bp proximal
Rr622390	regulatory region 622390	1854 bp proximal