rs13488792 SNP Detail

Summary

• ID
  rs13488792
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135755986 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAAATCAC AGACTGGCCC
  AGATAGCTAC TCACTTTCCA AGAAGACCTT TGTCCCCTTG AGTGTCACTC AAGTTCCAGG
  TGCCTGGCAG GACTCAGGAG ATACTGCAGA GTCTAGTTAA AGTAGCTAAG GCCTTCAGGG
  ACTAGGGCTG GGATGCCTGT CACATGCCTA TGTGGTGACA GGGCCTAGGT TTGCAGCCAG
  Y
  TCTGCCTCTG ACGTGGCTCT CTTCTCCTGC TGTGATTCCC CTGGGCTCCA GCTCAGGGAC
  AGGACAGGCC CTTGGAAGCC AGAGATGGCA CATTCTAGTC CCTACCCTCA GCATCTGGCA
  TGGAGCCCTT GCCTGCCCTG GGTGCTGGGG CTGGAGATGG GATTCCTATG GATACATCTG
  TCTTTTTGAG AAGAGCCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	C3H/HeJ	CAST/EiJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20404132	PS02182920	PERLEGEN	MM_PANEL	f	SNP	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	C3H/HeJ	CAST/EiJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13488792					SNP	T	T	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135755986 () rs orientation: forward

Symbol	Name	Function Class
Por	cytochrome p450 oxidoreductase	within coordinates
Rr124528	regulatory region 124528	within coordinates
Tssr49176	transcription start site region 49176	1392 bp downstream
Tssr49177	transcription start site region 49177	1358 bp downstream
Tssr49178	transcription start site region 49178	1524 bp upstream