rs13488793 SNP Detail

Summary

• ID
  rs13488793
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135756965 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCGCCACCA CCGCAGGCGG
  CCGCCCACTT TTCCCCTGAG TTTGTCTTTG TGTCTGTGTG AGGGTGGCCG CTCATACTCA
  TGCACATGAT GTCCAGGTAT GCAGAGGTCA GAAGTCACCT CAAGTGCTGG AAACCTTACC
  AGACTCTGTG TATATATTCT GTGTAAGTAT ATGCAGCTGT GCGCACATAC AGGCTAGAGG
  K
  AGCACAGGAT GGCCAGCTTG TCGTGGTGTG GGATGCAAAC TCTCATCCTC ATGACTGGGG
  ATCAAGCCCT CTTCGTTGCT GGGCTATCTC TGCACATGCA CAGCCCTCCC CCCCCCCCCA
  TACACCCCGG CCCACATCTC ACACTCCTAT CCCCTGAGCA CACTTGGTTT TCTCCCATTG
  GATCTCCCAT TGGCTCACTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	CAST/EiJ	DBA/2J	MSM/Ms	NZB/BlNJ	NZW/LacJ
ss20404133	PS02182922	PERLEGEN	MM_PANEL	f	SNP	T	T	T	G			T	T
ss144510656	ENSMUSSNP6592285	ENSEMBL	ENSEMBL_Sanger	f	SNP					T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	CAST/EiJ	DBA/2J	MSM/Ms	NZB/BlNJ	NZW/LacJ
rs13488793					SNP	T	T	T	G	T	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135756965 () rs orientation: forward

Symbol	Name	Function Class
Por	cytochrome p450 oxidoreductase	within coordinates
Rr124528	regulatory region 124528	564 bp distal
Tssr49178	transcription start site region 49178	545 bp upstream