rs13488880 SNP Detail

Summary

• ID
  rs13488880
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135805421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTTTAATC CCAGCACTTG
  GGAGATAGAG GCAGGGGGAT CTCTGAGTTC ATCAGTCCAA TCTACAGAGT TCCAGGAGAG
  CCAGGGCTAC ACAGAGAAAC CTCGTCTCAG AAAACCAAAA TTAATTAATT AATGATTAAT
  AAATACATAC TCCCTGACCC CTAGATGACG TCAGAAAGTT AAACAATTAC CAGAGCATAT
  W
  CTTCAGAGAT AAGATCAAGG GCAGTGCTTA TCCATATATC CCCACCCCAA TAGAAAGCAT
  CTCCTGGAAC ACAAGGCTAC GTCTTCCTGT CTCCTCCTTT CCCTTGCCTC TCCATACTTG
  GCACTATTGA AGAATCAGCA GCATGGGCCC TGGAGATTGC ACTCAGGCTT GGCAGCCCGC
  TTCTCTGCCC ACTGAACCAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SM/J	SPRET/EiJ
ss20404230	PS02183082	PERLEGEN	MM_PANEL	f	SNP	T	T	T	A	T	A	A	T	T	A	T		A	T	T		A
ss321697707	CHEV_5_136252437	CHEVERUD	SCREENING_POP	f	SNP												A				T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SM/J	SPRET/EiJ
rs13488880					SNP	T	T	T	A	T	A	A	T	T	A	T	A	A	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135805421 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16763	CpG island 16763	1246 bp proximal
Gm30205	predicted gene, 30205	1731 bp downstream
Rr367967	regulatory region 367967	1673 bp upstream
Rr622430	regulatory region 622430	1207 bp proximal
Rr622431	regulatory region 622431	1661 bp proximal
Rr622432	regulatory region 622432	1924 bp proximal
Styxl1	serine/threonine/tyrosine interacting-like 1	within coordinates
Tssr49186	transcription start site region 49186	59 bp upstream
Tssr49187	transcription start site region 49187	1898 bp upstream
Tssr53761	transcription start site region 53761	1715 bp downstream
Tssr53762	transcription start site region 53762	1773 bp downstream