rs13488881 SNP Detail

Summary

• ID
  rs13488881
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135805502 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGCTACA CAGAGAAACC
  TCGTCTCAGA AAACCAAAAT TAATTAATTA ATGATTAATA AATACATACT CCCTGACCCC
  TAGATGACGT CAGAAAGTTA AACAATTACC AGAGCATATT CTTCAGAGAT AAGATCAAGG
  GCAGTGCTTA TCCATATATC CCCACCCCAA TAGAAAGCAT CTCCTGGAAC ACAAGGCTAC
  R
  TCTTCCTGTC TCCTCCTTTC CCTTGCCTCT CCATACTTGG CACTATTGAA GAATCAGCAG
  CATGGGCCCT GGAGATTGCA CTCAGGCTTG GCAGCCCGCT TCTCTGCCCA CTGAACCATT
  ACCAGCTCAG ACAAGAGGCA CTTCCCTCCT CCAGGGCTCC CACTAAGACC CACCCAGTCT
  TCTGGCAGGT CTGTTTAAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20404231	PS02183083	PERLEGEN	MM_PANEL	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13488881					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135805502 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16763	CpG island 16763	1165 bp proximal
Gm30205	predicted gene, 30205	1812 bp downstream
Rr367967	regulatory region 367967	1592 bp upstream
Rr622430	regulatory region 622430	1126 bp proximal
Rr622431	regulatory region 622431	1580 bp proximal
Rr622432	regulatory region 622432	1843 bp proximal
Styxl1	serine/threonine/tyrosine interacting-like 1	within coordinates
Tssr49186	transcription start site region 49186	12 bp downstream
Tssr49187	transcription start site region 49187	1817 bp upstream
Tssr49188	transcription start site region 49188	1980 bp upstream
Tssr49189	transcription start site region 49189	1999 bp upstream
Tssr53761	transcription start site region 53761	1634 bp downstream
Tssr53762	transcription start site region 53762	1692 bp downstream