rs13488882 SNP Detail

Summary

• ID
  rs13488882
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:135806391 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCTCCCCA ACTTTTTGTT
  TGCATGGTTG TTATTTTGTT TTTTGGTTTT TTTTTTAACA GAGTTTCATG TTGGCCTCAA
  ACTCACATCA ATCCTTCTGC TGCAGCCTCC GGAATATTTT TTATGTGTGT AGCATGCGTT
  CGAATGTATG TAGGTGCATA TATGTGCACG TCTGTATGTG TATGGGTCCT TACTTTTACA
  K
  TTTTATCATT TTAAATGTTT ATTTCTGTGT CTCCGTGGGT ACCTGCACAC GAATGCCTGC
  GGCAATGGCT ATGCCTGAAG CTAGAGTTTC AGGGGGTTGT GGGCCACCTG CTAGCGTCTC
  AGGATCGAAG CTCTGCAAGA GCAGCAAGTG CTCTTAACCA GAGTCATCCC TCCAGCTCTG
  ATCCTGAACT TTAGAATAGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20404232	PS02183085	PERLEGEN	MM_PANEL	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13488882					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135806391 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16763	CpG island 16763	276 bp proximal
Mdh2	malate dehydrogenase 2, NAD (mitochondrial)	1112 bp upstream
Rr367967	regulatory region 367967	703 bp upstream
Rr622430	regulatory region 622430	237 bp proximal
Rr622431	regulatory region 622431	691 bp proximal
Rr622432	regulatory region 622432	954 bp proximal
Styxl1	serine/threonine/tyrosine interacting-like 1	Intron
Tssr49186	transcription start site region 49186	901 bp downstream
Tssr49187	transcription start site region 49187	928 bp upstream
Tssr49188	transcription start site region 49188	1091 bp upstream
Tssr49189	transcription start site region 49189	1110 bp upstream
Tssr49190	transcription start site region 49190	1137 bp upstream
Tssr49191	transcription start site region 49191	1163 bp upstream
Tssr53761	transcription start site region 53761	745 bp downstream
Tssr53762	transcription start site region 53762	803 bp downstream