rs13488883 SNP Detail

Summary

• ID
  rs13488883
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:135807013 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAACGCGA GTACTCGCTC
  CTCCGAGCGG GTTGTGTGAG AAGCCTGGAA CCTCAACAAG GCTCTGTGTA ACTTGTCGGA
  AGGGCGGCTC TGGAGGAAAC AGGTGGGGAG ATGCTGCCCA CCCCGCCCCG GGACGCCCCG
  GGACCCCAGC CGGCCTCTTC CAGGGGGCAG GAAAGTTGGG CCTGGCTGAG GTCAGGAGCT
  S
  CGGGGCCGCC TGACCTGCTG CGCGACTTCT GTCAGGCTCC CCGGCAGGAC GTCCGACCGG
  AGCCCCACCT GGGATAACGG GTACTTCTAA CCTAGAGCCT GTCCTCCGGG CGAGCGCTCC
  AAGAGTCCTT CTAGTACCGG GTTGCTAGGG GCGGTCCCAA GATTCCGCCT AATCCTGGTG
  ACCGTCTGTC CTAGCGCTAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
ss20404233	PS02183087	PERLEGEN	MM_PANEL	f	SNP	C	C	C	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
rs13488883					SNP	C	C	C	C	C	C	C	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135807013 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16763	CpG island 16763	within coordinates
Mdh2	malate dehydrogenase 2, NAD (mitochondrial)	490 bp upstream
Rr367967	regulatory region 367967	81 bp upstream
Rr622430	regulatory region 622430	within coordinates
Rr622431	regulatory region 622431	69 bp proximal
Rr622432	regulatory region 622432	332 bp proximal
Styxl1	serine/threonine/tyrosine interacting-like 1	Intron
Tssr49186	transcription start site region 49186	1523 bp downstream
Tssr49187	transcription start site region 49187	306 bp upstream
Tssr49188	transcription start site region 49188	469 bp upstream
Tssr49189	transcription start site region 49189	488 bp upstream
Tssr49190	transcription start site region 49190	515 bp upstream
Tssr49191	transcription start site region 49191	541 bp upstream
Tssr53761	transcription start site region 53761	123 bp downstream
Tssr53762	transcription start site region 53762	181 bp downstream