rs13488884 SNP Detail

Summary

• ID
  rs13488884
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135807143 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACGCCCCG GGACCCCAGC
  CGGCCTCTTC CAGGGGGCAG GAAAGTTGGG CCTGGCTGAG GTCAGGAGCT CCGGGGCCGC
  CTGACCTGCT GCGCGACTTC TGTCAGGCTC CCCGGCAGGA CGTCCGACCG GAGCCCCACC
  TGGGATAACG GGTACTTCTA ACCTAGAGCC TGTCCTCCGG GCGAGCGCTC CAAGAGTCCT
  Y
  CTAGTACCGG GTTGCTAGGG GCGGTCCCAA GATTCCGCCT AATCCTGGTG ACCGTCTGTC
  CTAGCGCTAG GTCCCGGAAG TGGGCAAAGC TAACGGTGGG GAGGGGCGGG GCAAGGGGCG
  GGGTAGGAGG CGGGGGAAGG AACGGCCTGA TAAAGTGAAG CCGGGCCTCT CTCGCGAGAT
  CTCGGAAGTG GCCGGAGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20404234	PS02183088	PERLEGEN	MM_PANEL	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13488884					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135807143 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16763	CpG island 16763	within coordinates
Mdh2	malate dehydrogenase 2, NAD (mitochondrial)	360 bp upstream
Rr367967	regulatory region 367967	within coordinates
Rr622430	regulatory region 622430	62 bp distal
Rr622431	regulatory region 622431	within coordinates
Rr622432	regulatory region 622432	202 bp proximal
Styxl1	serine/threonine/tyrosine interacting-like 1	within coordinates
Tssr49186	transcription start site region 49186	1653 bp downstream
Tssr49187	transcription start site region 49187	176 bp upstream
Tssr49188	transcription start site region 49188	339 bp upstream
Tssr49189	transcription start site region 49189	358 bp upstream
Tssr49190	transcription start site region 49190	385 bp upstream
Tssr49191	transcription start site region 49191	411 bp upstream
Tssr53761	transcription start site region 53761	within coordinates
Tssr53762	transcription start site region 53762	51 bp downstream