rs13488887 SNP Detail

Summary

• ID
  rs13488887
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135807507 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCTCTCTC GCGAGATCTC
  GGAAGTGGCC GGAGCCCAGA GATGACTTCT TTGGAGCCGG AGAGAATCGT GACGTCAGGC
  CTCGCTCGCC GGGTCTAGGG CGTGCTAGAC AAGGAACCAC ACGGCCGAGC CTGTCTCGCG
  AGATTTGGCT CAAGCTTCTT GCGCTTCTCT CGCGAGATCA GGTGGCTCTG GACCGGGCGG
  S
  CACTGCGCAG AGTGGAGGTC GTTGGAGTCA CTCGTCTTCT TGTAGCTCCT GCCAGTAGCT
  CCGTGTCCCG CCCGCCCTAG CCATGCTGTC CGCTCTCGCC CGTCCTGCCG GCGCCGCTCT
  CCGCCGCAGC TTCAGCACTT CGGCCCAGGT ACAAGGGGCT GCCTGCCTAG GAAGGAACTC
  CGGGGGCGGC ACACGCGTCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20404237	PS02183094	PERLEGEN	MM_PANEL	f	SNP	C	C	C	C	C	C	C	C	G	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13488887					SNP	C	C	C	C	C	C	C	C	G	C	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135807507 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16763	CpG island 16763	within coordinates
Mdh2	malate dehydrogenase 2, NAD (mitochondrial)	within coordinates
Rr367967	regulatory region 367967	6 bp downstream
Rr622430	regulatory region 622430	426 bp distal
Rr622431	regulatory region 622431	163 bp distal
Rr622432	regulatory region 622432	within coordinates
Rr622433	regulatory region 622433	1751 bp proximal
Styxl1	serine/threonine/tyrosine interacting-like 1	268 bp upstream
Tssr49187	transcription start site region 49187	182 bp downstream
Tssr49188	transcription start site region 49188	8 bp downstream
Tssr49189	transcription start site region 49189	within coordinates
Tssr49190	transcription start site region 49190	21 bp upstream
Tssr49191	transcription start site region 49191	47 bp upstream
Tssr53761	transcription start site region 53761	325 bp upstream
Tssr53762	transcription start site region 53762	262 bp upstream