rs13488889 SNP Detail

Summary

• ID
  rs13488889
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135807709 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGCGCAGA GTGGAGGTCG
  TTGGAGTCAC TCGTCTTCTT GTAGCTCCTG CCAGTAGCTC CGTGTCCCGC CCGCCCTAGC
  CATGCTGTCC GCTCTCGCCC GTCCTGCCGG CGCCGCTCTC CGCCGCAGCT TCAGCACTTC
  GGCCCAGGTA CAAGGGGCTG CCTGCCTAGG AAGGAACTCC GGGGGCGGCA CACGCGTCCC
  S
  GGAGCTCGGC GTTTCTTAAC CATCCAAGGC TCACTCTGGA CGTCTGGGCC GCCCGGCTCA
  CATCCCGACC AACATGGAAG GGGGACAGAG TCAGTCCAGG TTTCCTCCAT AGTCTGCGCT
  CCACGTAGGT GCAGAAGCCG AGGCTCGCGG TCCGGATGCG AGTTGCATTA TATGCAACTT
  TGCATTGCTT CGACTTAACT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20404239	PS02183097	PERLEGEN	MM_PANEL	f	SNP	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13488889					SNP	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135807709 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16763	CpG island 16763	within coordinates
Mdh2	malate dehydrogenase 2, NAD (mitochondrial)	within coordinates
Rr367967	regulatory region 367967	208 bp downstream
Rr622430	regulatory region 622430	628 bp distal
Rr622431	regulatory region 622431	365 bp distal
Rr622432	regulatory region 622432	within coordinates
Rr622433	regulatory region 622433	1549 bp proximal
Styxl1	serine/threonine/tyrosine interacting-like 1	470 bp upstream
Tssr49187	transcription start site region 49187	384 bp downstream
Tssr49188	transcription start site region 49188	210 bp downstream
Tssr49189	transcription start site region 49189	192 bp downstream
Tssr49190	transcription start site region 49190	166 bp downstream
Tssr49191	transcription start site region 49191	143 bp downstream
Tssr53761	transcription start site region 53761	527 bp upstream
Tssr53762	transcription start site region 53762	464 bp upstream