rs13488891 SNP Detail

Summary

• ID
  rs13488891
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  121
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135808473 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATTTTATTT TTAaaagtaa ttttatggtt gaagggttca
  cctcaacatg aggaactgta ttaaagggtt gcagcattag gaagcttaag aacccctgTT
  K
  TAGACtttat ttatttattt atttatttat ttatGAGAGT GAGAAGGCCT TTGATGAACC
  TGCCAGGCAG GGGAACCGGG CTTTGAACTC AGGTCCTTAT                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20404241	PS02183100	PERLEGEN	MM_PANEL	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13488891					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135808473 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16763	CpG island 16763	272 bp distal
Mdh2	malate dehydrogenase 2, NAD (mitochondrial)	within coordinates
Rr367967	regulatory region 367967	972 bp downstream
Rr622430	regulatory region 622430	1392 bp distal
Rr622431	regulatory region 622431	1129 bp distal
Rr622432	regulatory region 622432	164 bp distal
Rr622433	regulatory region 622433	785 bp proximal
Styxl1	serine/threonine/tyrosine interacting-like 1	1234 bp upstream
Tssr49187	transcription start site region 49187	1148 bp downstream
Tssr49188	transcription start site region 49188	974 bp downstream
Tssr49189	transcription start site region 49189	956 bp downstream
Tssr49190	transcription start site region 49190	930 bp downstream
Tssr49191	transcription start site region 49191	907 bp downstream
Tssr53761	transcription start site region 53761	1291 bp upstream
Tssr53762	transcription start site region 53762	1228 bp upstream