rs13488893 SNP Detail

Summary

• ID
  rs13488893
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135809199 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGGTTCCC AGGACCCAAG
  GCAGGTGACT CCAACCACCA GAGGGTCTGA AGCCTTCTTC TGCCCTCCGT GGGTACCTGC
  ACATAAACAC ACACACCAAA AAATAATCCA GCTAACATAT TACACCCTGG GTGTGGTGAT
  GCATGCTTGT AACCCCAGCC ACTCAGGAGT TCCAGACAGG AAGATTAAAA GTTTGAAACC
  Y
  GCCCCGGTGA CTTAGGAGGA CTCTGAAAAG AAACTAGCAC TAGGGTATAC ATAGTTCAGT
  GGTAAACACA TGTGAGGCAT GCACAAAGCT CTGGGTGCTC AGATACAAAG ATGAATGGGA
  AGTCTGGGGT GGGTCACAGA CGAGTTAACC TGAACAGTAG AGTAGGGTTA GCTCAGCAGA
  GATGGTGAAT AATAGTGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20404243	PS02183104	PERLEGEN	MM_PANEL	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13488893					SNP	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135809199 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16763	CpG island 16763	998 bp distal
Mdh2	malate dehydrogenase 2, NAD (mitochondrial)	within coordinates
Rr367967	regulatory region 367967	1698 bp downstream
Rr622431	regulatory region 622431	1855 bp distal
Rr622432	regulatory region 622432	890 bp distal
Rr622433	regulatory region 622433	59 bp proximal
Styxl1	serine/threonine/tyrosine interacting-like 1	1960 bp upstream
Tssr49187	transcription start site region 49187	1874 bp downstream
Tssr49188	transcription start site region 49188	1700 bp downstream
Tssr49189	transcription start site region 49189	1682 bp downstream
Tssr49190	transcription start site region 49190	1656 bp downstream
Tssr49191	transcription start site region 49191	1633 bp downstream
Tssr53762	transcription start site region 53762	1954 bp upstream