rs13488894 SNP Detail

Summary

• ID
  rs13488894
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135809264 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTAGG GTATACATAG TTCAGTGGTA
  W
  ACACATGTGA GGCATGCACA AAGCT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SM/J
ss20404244	PS02183105	PERLEGEN	MM_PANEL	f	SNP	A	A	A	T	A	T	T	A	A	A	A		T	A	A
ss321697709	CHEV_5_136256280	CHEVERUD	SCREENING_POP	f	SNP												T				A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SM/J
rs13488894					SNP	A	A	A	T	A	T	T	A	A	A	A	T	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135809264 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16763	CpG island 16763	1063 bp distal
Mdh2	malate dehydrogenase 2, NAD (mitochondrial)	within coordinates
Rr367967	regulatory region 367967	1763 bp downstream
Rr622431	regulatory region 622431	1920 bp distal
Rr622432	regulatory region 622432	955 bp distal
Rr622433	regulatory region 622433	within coordinates
Tssr49187	transcription start site region 49187	1939 bp downstream
Tssr49188	transcription start site region 49188	1765 bp downstream
Tssr49189	transcription start site region 49189	1747 bp downstream
Tssr49190	transcription start site region 49190	1721 bp downstream
Tssr49191	transcription start site region 49191	1698 bp downstream