rs13488895 SNP Detail

Summary

• ID
  rs13488895
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135809349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGGG TGGGTCACAG ACGAGTTAAC
  M
  TGAACAGTAG AGTAGGGTTA GCTCA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SM/J
ss20404245	PS02183107	PERLEGEN	MM_PANEL	f	SNP	C	C	C	A	C	A	A	C	C	A	C		A	C	C
ss321697710	CHEV_5_136256365	CHEVERUD	SCREENING_POP	f	SNP												A				C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SM/J
rs13488895					SNP	C	C	C	A	C	A	A	C	C	A	C	A	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135809349 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16763	CpG island 16763	1148 bp distal
Mdh2	malate dehydrogenase 2, NAD (mitochondrial)	within coordinates
Rr367967	regulatory region 367967	1848 bp downstream
Rr622432	regulatory region 622432	1040 bp distal
Rr622433	regulatory region 622433	within coordinates
Tssr49188	transcription start site region 49188	1850 bp downstream
Tssr49189	transcription start site region 49189	1832 bp downstream
Tssr49190	transcription start site region 49190	1806 bp downstream
Tssr49191	transcription start site region 49191	1783 bp downstream