rs13488958 SNP Detail

Summary

• ID
  rs13488958
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135757371 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTGGAGCT AGAGCACCTT
  TCAGCTTGGG CCCTGTCTGC CTGAGATGAA GTCAAGGGAA GGAAGGGGAC AGAAGATGGA
  GAGGGAAGAG AGAGGAGCCA AGACGCTAGA AGGAGAACGT GGGCACATAA CCAGGCCAGC
  CTTGCGCTGT CCTGCGGCTG ACCGATGGCC ATAAGCGCAC TGGTGATTCG AGGCATATGA
  M
  GGAGTGATTA TACCACTCCC AGCTGTTGGC TCTGCCACTA GGGCCTAGCA CAGGTGGACT
  GACCCCTGGC AAACTGCCAA GGGTCGCACA GCCTGTCACG CCCATCCTGC AACAGCGTCC
  CCATCAGACT GTCTTGTTTT TCAGGGCCCC ACCTGTCAAA GAGAGCAGCT TCGTGGAAAA
  GATGAAGAAA ACGGTGAGAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ
ss20404309	PS02182923	PERLEGEN	MM_PANEL	f	SNP	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ
rs13488958					SNP	C	C	C	C	C	C	C	C	A	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135757371 () rs orientation: forward

Symbol	Name	Function Class
Por	cytochrome p450 oxidoreductase	within coordinates
Rr124528	regulatory region 124528	970 bp distal
Tssr49178	transcription start site region 49178	139 bp upstream
Tssr49179	transcription start site region 49179	1776 bp upstream