rs13489290 SNP Detail

Summary

• ID
  rs13489290
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:36925418 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAAGAAGA GAAAAGATTT
  TCTTGTTTGT CCTCTGTCCT CTACCCACTT ACCATGACTT GTGAAGCACA CATGTAGTCT
  TATATACAAA ATAAATTGTA AAAAGAAAAA CAACCCAGTA AAACACCAAC ATAAAGTGTG
  GCTAGGGAAG TGGCTCTCTT GATAGAATGT CTGCCTAGCA CTTGGGAAGT GAAAGCAGGA
  R
  GATCGGAAGT TCAGAGTCAG CTTTGGTGCC AGGCAAGGTG GCACAGGACT TTAATCCTAG
  CACAAGGGAA GTAGAGACAG GCCAATTATC TGTGAGTTAT GGGTTGGCCA TAGCTGCATA
  GTGAAACCCT GTATAAAAAT TTATTCAGCC TTGGATTCAC ATGAGATGCT CTCTCAATAA
  AACAAAACAA AACAAAACAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20404642	PS02183791	PERLEGEN	MM_PANEL	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13489290					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36925418 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9878	CpG island 9878	1369 bp proximal
Hars2	histidyl-tRNA synthetase 2	mRNA-UTR
Rr405606	regulatory region 405606	1316 bp upstream
Rr536210	regulatory region 536210	1021 bp proximal
Tssr150673	transcription start site region 150673	1467 bp upstream
Tssr150674	transcription start site region 150674	1553 bp upstream
Zmat2	zinc finger, matrin type 2	1558 bp upstream