rs13489291 SNP Detail

Summary

• ID
  rs13489291
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:36925883 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAATCTCTT GAGTGTAGGG
  TCACTTGAAT AAGAGTAAAG ATTAAAACTA GCAGGACATA AGAGGGGTTT AATGTTTAGA
  CAGCAGGTTG GATAGATGAA GAGGGTAAGA TGCAGGGGGA ATTTGGGGAA CGCAGCCTCA
  AAGAGGGAGG TCTTTAGGGG AACACAGAAG GGCAGAGGTC CTGTGACTCT AGTAATATAC
  Y
  AAGGAATCTC TACAAAGAGA TTTTCAGGCC AGCCAGGGCC AAATAGTGAG ACCTTGTCTA
  CAAACATACC ACACCTATAA TCCCTGTAAT CCCTCTTAGA AAGTGGTGGC AATAAGTTCA
  GGCCAAAACT GAACTCTAAT TTGCCTAGCA AACCGTATTT TAAAGACTAA AACACTTGTG
  ACTGTAGATG CCCCATTCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20404643	PS02183793	PERLEGEN	MM_PANEL	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13489291					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36925883 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9878	CpG island 9878	904 bp proximal
Hars2	histidyl-tRNA synthetase 2	268 bp downstream
Rr405606	regulatory region 405606	851 bp upstream
Rr536210	regulatory region 536210	556 bp proximal
Tssr150673	transcription start site region 150673	1002 bp upstream
Tssr150674	transcription start site region 150674	1088 bp upstream
Zmat2	zinc finger, matrin type 2	1093 bp upstream