TCTAAACTCA TTTCATTTAT ACAGTACAAT TTAATCTTGA AAACAGAATC AGCCAACACC CTAGAATGAA GCATTCGCCA CTCTAACGAG TGCTTAAAAT ATGTTGTTTG TGGAAGAGGT TTGCTAGGCA GGAAATTGCC TAGCAGGGAA CCTAGCTCAA TTGGTAGAAT TGAGCTTGAT AGCATGAATG AAGCCTCTAG S ACCACATGAA CCGGTCGTGG TGGTACATGC CCCATAAATT CAGCACTTGG GAAGTAGAGG CAGGAGAGAT CAGAAGTTCA AGATTAGAGA CTATATAGCC AATTAGAGTT CAGTTTTGGC TACCTGAGAA CCTGTCTTTA AAAAAAAAAA AAAAACCAAA ACAACCAAAA CTAGAAATCC GGTAAAAAAC AAAACAAAAC S = C/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129X1/SvJ |
A/HeJ |
A/J |
AKR/J |
B10.D2-Hc<0> H2 |
BALB/cByJ |
BALB/cJ |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
MRL/MpJ |
NZB/BlNJ |
NZW/LacJ |
SPRET/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss20404644 | PS02183796 | PERLEGEN | MM_PANEL | f | SNP | G | G | G | G | G | G | G | G | G | G | G | G | G | C |
SNP Consensus Information | |||||||||||||||||||
SNP | Consensus Type | 129X1/SvJ |
A/HeJ |
A/J |
AKR/J |
B10.D2-Hc<0> H2 |
BALB/cByJ |
BALB/cJ |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
MRL/MpJ |
NZB/BlNJ |
NZW/LacJ |
SPRET/EiJ |
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rs13489292 | SNP | G | G | G | G | G | G | G | G | G | G | G | G | G | C |
Location: Chr18:36926445 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi9878 | CpG island 9878 | 342 bp proximal | ||||||
Hars2 | histidyl-tRNA synthetase 2 | 830 bp downstream | ||||||
Rr405606 | regulatory region 405606 | 289 bp upstream | ||||||
Rr536210 | regulatory region 536210 | within coordinates | ||||||
Tssr150673 | transcription start site region 150673 | 440 bp upstream | ||||||
Tssr150674 | transcription start site region 150674 | 526 bp upstream | ||||||
Tssr150675 | transcription start site region 150675 | 1710 bp upstream | ||||||
Zmat2 | zinc finger, matrin type 2 | 531 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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