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rs13489292 SNP Detail
Summary
  • ID
    rs13489292
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr18:36926445 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TCTAAACTCA TTTCATTTAT
    ACAGTACAAT TTAATCTTGA AAACAGAATC AGCCAACACC CTAGAATGAA GCATTCGCCA
    CTCTAACGAG TGCTTAAAAT ATGTTGTTTG TGGAAGAGGT TTGCTAGGCA GGAAATTGCC
    TAGCAGGGAA CCTAGCTCAA TTGGTAGAAT TGAGCTTGAT AGCATGAATG AAGCCTCTAG
    S
    ACCACATGAA CCGGTCGTGG TGGTACATGC CCCATAAATT CAGCACTTGG GAAGTAGAGG
    CAGGAGAGAT CAGAAGTTCA AGATTAGAGA CTATATAGCC AATTAGAGTT CAGTTTTGGC
    TACCTGAGAA CCTGTCTTTA AAAAAAAAAA AAAAACCAAA ACAACCAAAA CTAGAAATCC
    GGTAAAAAAC AAAACAAAAC                                            
    
    S = C/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/HeJ
A/J
AKR/J
B10.D2-Hc<0> H2 H2-T18/oSnJ
BALB/cByJ
BALB/cJ
C3H/HeJ
CAST/EiJ
DBA/2J
MRL/MpJ
NZB/BlNJ
NZW/LacJ
SPRET/EiJ
ss20404644 PS02183796 PERLEGEN MM_PANEL f SNP G G G G G G G G G G G G G C
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/HeJ
A/J
AKR/J
B10.D2-Hc<0> H2 H2-T18/oSnJ
BALB/cByJ
BALB/cJ
C3H/HeJ
CAST/EiJ
DBA/2J
MRL/MpJ
NZB/BlNJ
NZW/LacJ
SPRET/EiJ
rs13489292 SNP G G G G G G G G G G G G G C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr18:36926445 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi9878 CpG island 9878 342 bp proximal
Hars2 histidyl-tRNA synthetase 2 830 bp downstream
Rr405606 regulatory region 405606 289 bp upstream
Rr536210 regulatory region 536210 within coordinates
Tssr150673 transcription start site region 150673 440 bp upstream
Tssr150674 transcription start site region 150674 526 bp upstream
Tssr150675 transcription start site region 150675 1710 bp upstream
Zmat2 zinc finger, matrin type 2 531 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory

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