rs13489294 SNP Detail

Summary

• ID
  rs13489294
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:36927635 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAGGATGG TGGGTGCTCG
  CTCCACGAAG GGATAAGGGG ACGGTAGAGA TGATGCTGTG GCTAGAGAAG GAATGCCTCA
  GCAACAGGAT AGATAAATCA CTTGCAGTTA ACGAGGCAAA CAAAACAAAA CAAAACAAAA
  CAGAACAAAA CAAAAGCCCT AAAGCTTTTT CCTCTCCTTT TTACGTGAGC TTCCCCTAGG
  Y
  GTAGCCCATA TTCCAAATCA AATCAAATCA AAACCTCCCA AACAAGCGTG TCCAGCTGCT
  TGGGTCTTAG TTGATTCCAG ATGTAACTGC ATGAAAACAT TGAACATACG CTACTCGGTG
  TGAGTACCCC TCTTTTGAAA GGGTCACCTC CAGGAAAAAT TCAGAACTCC TCAGTTCAAC
  TAGACAACAC ATAGGAAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20404646	PS02183800	PERLEGEN	MM_PANEL	f	SNP	C	C	C	C	C	C	C	C	T	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13489294					SNP	C	C	C	C	C	C	C	C	T	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36927635 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9878	CpG island 9878	263 bp distal
Rr405606	regulatory region 405606	600 bp downstream
Rr536210	regulatory region 536210	696 bp distal
Tssr150673	transcription start site region 150673	733 bp downstream
Tssr150674	transcription start site region 150674	645 bp downstream
Tssr150675	transcription start site region 150675	520 bp upstream
Tssr150676	transcription start site region 150676	1447 bp upstream
Tssr150677	transcription start site region 150677	1478 bp upstream
Tssr150678	transcription start site region 150678	1938 bp upstream
Zmat2	zinc finger, matrin type 2	Intron