rs13489297 SNP Detail

Summary

• ID
  rs13489297
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:36928272 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCATAATCT TTTTCCTTTC
  AGGGAAACCA GTGCAGCCTG TCAAGCGGGA GCTTCTGCGG CACAGGGATT ACAAGGTGGA
  CCTGGAGTCC AAGCTGGGGA AGACGATTGT TATCACCAAG ACGACCCCAC AGTCTGAAAT
  GGGAGGGTGA GTTGCTTCCT GTCCGACTCT TAATACCACA GCTGGCCTAA TAAACTGTAT
  Y
  GGTTTTTAGG AAGTGTTGAG GAGAATCCTG GGCCCAGGGA TGGCCACCGT TCTGACCATA
  ACCTGATTCT TTGTCTTTCT TTGTCCCCTG AAGTTTGTAG CCCACTCGGT CCTATTTCTA
  GGAGGGGTGG TTCTCTGGGC TTCTTCCTAT TGGTACTGTA ATACTTCCCT GATATCTTCA
  GGGGGGCTAT ATAGTCTGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20404649	PS02183805	PERLEGEN	MM_PANEL	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13489297					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36928272 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9878	CpG island 9878	900 bp distal
Rr405606	regulatory region 405606	1237 bp downstream
Rr536210	regulatory region 536210	1333 bp distal
Tssr150673	transcription start site region 150673	1370 bp downstream
Tssr150674	transcription start site region 150674	1282 bp downstream
Tssr150675	transcription start site region 150675	91 bp downstream
Tssr150676	transcription start site region 150676	810 bp upstream
Tssr150677	transcription start site region 150677	841 bp upstream
Tssr150678	transcription start site region 150678	1301 bp upstream
Zmat2	zinc finger, matrin type 2	Intron