rs13489298 SNP Detail

Summary

• ID
  rs13489298
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:36928423 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTGG TTCTCTGGGC TTCTTCCTAT
  Y
  GGTACTGTAA TACTTCCCTG ATATC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	SM/J	WSB/EiJ
ss20404650	PS02183807	PERLEGEN	MM_PANEL	f	SNP		C	C	C	C	T	C	C		C	T	C	C				T		C	C
ss39626634	mCV23084266	ABI	CRAMUS_MOUSE	f	SNP		C		C							T		C
ss49276055	NES12715258	PERLEGEN	MM_PANEL2	f	SNP	C			C	C				T	C		C	C	C		C		C		C		C
ss146951513	ENSMUSSNP6998996	ENSEMBL	ENSEMBL_Sanger	f	SNP				C									C
ss325584909	CHEV_18_36955024	CHEVERUD	SCREENING_POP	f	SNP															T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	SM/J	WSB/EiJ
rs13489298					SNP	C	C	C	C	C	T	C	C	T	C	T	C	C	C	T	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49276055	NES12715258	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36928423 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9878	CpG island 9878	1051 bp distal
Rr405606	regulatory region 405606	1388 bp downstream
Rr536210	regulatory region 536210	1484 bp distal
Tssr150673	transcription start site region 150673	1521 bp downstream
Tssr150674	transcription start site region 150674	1433 bp downstream
Tssr150675	transcription start site region 150675	242 bp downstream
Tssr150676	transcription start site region 150676	659 bp upstream
Tssr150677	transcription start site region 150677	690 bp upstream
Tssr150678	transcription start site region 150678	1150 bp upstream
Zmat2	zinc finger, matrin type 2	Intron