rs13489300 SNP Detail

Summary

• ID
  rs13489300
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:36929126 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGACTTTCC CTAAAGCAAG
  TCATGTGAAG TTTGTCTGTT TTGTTAATTG AGACATTAAT TAGACATCAT CTAATTTTAC
  CTAGAGATTT GAGTTTCTTT CCTGAAAACA GTAAGATCCT TAGAAACCAG ATTGACCCAT
  GTGCTGTTTC TTCCCATTTG TCAGCTACTA CTGCAATGTC TGTGACTGTG TGGTGAAAGA
  Y
  TCCATTAACT TCCTGGACCA CATTAATGGA AAGAAACGTA AGGCATGGAG GTAGTTGGTG
  GCTGGAGCTG GGTTGGGTTT TAAAGGTGTG CTGGAGGGCA GGTGTGGTAG AGTGGTTTTC
  TGGGGCCTTT CGTTTGTTCG TTTGTTTGCT TGCTTGCTTC TGAGTATCCC TGGCTGTGTG
  CTACCTGTGC ATGACCACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZW/LacJ	SPRET/EiJ
ss20404652	PS02183810	PERLEGEN	MM_PANEL	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZW/LacJ	SPRET/EiJ
rs13489300					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36929126 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9878	CpG island 9878	1754 bp distal
Tssr150675	transcription start site region 150675	945 bp downstream
Tssr150676	transcription start site region 150676	31 bp downstream
Tssr150677	transcription start site region 150677	within coordinates
Tssr150678	transcription start site region 150678	447 bp upstream
Zmat2	zinc finger, matrin type 2	Coding-Synonymous