rs13489302 SNP Detail

Summary

• ID
  rs13489302
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:36929309 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCTG AGTATCCCTG GCTGTGTGCT
  R
  CCTGTGCATG ACCACAGAGG CCAGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	LG/J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SM/J	SPRET/EiJ
ss20404654	PS02183813	PERLEGEN	MM_PANEL	f	SNP	G	G	G	G	A	G	G	G	G		A	G	G		G
ss146951522	ENSMUSSNP2434590	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
ss325584910	CHEV_18_36955910	CHEVERUD	SCREENING_POP	f	SNP										A				G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	LG/J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SM/J	SPRET/EiJ
rs13489302					SNP	G	G	G	G	A	G	G	G	G	A	A	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36929309 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9878	CpG island 9878	1937 bp distal
Tssr150675	transcription start site region 150675	1128 bp downstream
Tssr150676	transcription start site region 150676	214 bp downstream
Tssr150677	transcription start site region 150677	183 bp downstream
Tssr150678	transcription start site region 150678	264 bp upstream
Zmat2	zinc finger, matrin type 2	Intron