rs13489303 SNP Detail

Summary

• ID
  rs13489303
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:36929341 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACCACATT AATGGAAAGA
  AACGTAAGGC ATGGAGGTAG TTGGTGGCTG GAGCTGGGTT GGGTTTTAAA GGTGTGCTGG
  AGGGCAGGTG TGGTAGAGTG GTTTTCTGGG GCCTTTCGTT TGTTCGTTTG TTTGCTTGCT
  TGCTTCTGAG TATCCCTGGC TGTGTGCTAC CTGTGCATGA CCACAGAGGC CAGAGGAGGA
  S
  GTTGGCTGGC CTTGATGATA ATCTGCCCAG TAAATAGGAG CAGGTGAGGC TGAGAGCTTC
  TTTTAGCCAT AGTTATTTTT GTTGTGTACT TTATTATGAA AAGGTAAACA AGTAAACAAA
  CCTAAAAAAG CCAGGGCGAG ACTTTCCCGG GGGGGGGGGG GGTGGCTGAG GATGTTATAA
  TGACTTGTCT CCGTTGTTAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	MRL/MpJ	NZW/LacJ	SPRET/EiJ
ss20404655	PS02183814	PERLEGEN	MM_PANEL	f	SNP	C	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	MRL/MpJ	NZW/LacJ	SPRET/EiJ
rs13489303					SNP	C	C	C	C	C	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36929341 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9878	CpG island 9878	1969 bp distal
Tssr150675	transcription start site region 150675	1160 bp downstream
Tssr150676	transcription start site region 150676	246 bp downstream
Tssr150677	transcription start site region 150677	215 bp downstream
Tssr150678	transcription start site region 150678	232 bp upstream
Zmat2	zinc finger, matrin type 2	Intron