rs13490727 SNP Detail

Summary

• ID
  rs13490727
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:37609083 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGCTGCT GTTCGTTGGA
  GTAAGACTCT GCAGGAGGGC CCGGGCAGCC TCTCCGGGTG TCTGCTTTGT GCCTGAAGAA
  CACTTTCCTG GCCACCTGGT GGATGTCAGC GGTGCAGGGA CCCTGTCCCA GAACTACCAG
  TATGAGGTGT GTCTGACTGG AGGATCAGGG ATAACCAGTG AATTTAAGTT TCTAAGTCCA
  R
  TTGCCTCTAA CTTCCTAACC GAAAGCACAG GGAGAGAAAT AGAATAAAAG CTAAACCCTT
  CTGCCCATGG ATGAAGCTCT AATGTAAACT ATACCCTTGT TGTGTAATGA AGAATGATTT
  CATGTTAACA TCTAGAAGTT AACTAATTTA GGACAGAAAA GAATACCTGT ATTTATTCCC
  AAAAACCTTT TCTTTAATTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
ss20406103	PS02186246	PERLEGEN	MM_PANEL	f	SNP		A	A		A	A		A	G					A		A	A		A
ss49274188	NES12728536	PERLEGEN	MM_PANEL2	f	SNP	A		A	A		A	A	A	G	A	A	G	G		A		A	A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
rs13490727					SNP	A	A	A	A	A	A	A	A	G	A	A	G	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49274188	NES12728536	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:37609083 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9914	CpG island 9914	412 bp distal
Gm37388	predicted gene, 37388	within coordinates
Gm38666	predicted gene, 38666	within coordinates
Gm38667	predicted gene, 38667	within coordinates
Pcdha4b	protocadherin alpha 4B	within coordinates
Pcdhb15	protocadherin beta 15	within coordinates
Pcdhb16	protocadherin beta 16	1784 bp upstream
Tssr5286	transcription start site region 5286	1816 bp upstream
Tssr150708	transcription start site region 150708	1775 bp upstream