rs13490729 SNP Detail

Summary

• ID
  rs13490729
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:37609396 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGATTTCA TGTTAACATC
  TAGAAGTTAA CTAATTTAGG ACAGAAAAGA ATACCTGTAT TTATTCCCAA AAACCTTTTC
  TTTAATTTAT GAAATGCATG TGTTGTGTGC TATCTCAAAT CTAATTTGAT TTCTCTTTGT
  TTTTTAAGAT TTGTTGAACT GCAATCTATT AAACAACAAA TCTTGGTAGA GATTGTTTAA
  R
  CTGTTTTTCC ATATCTACAT TTTTCATTTA TAATTATGTT CTGAGTCTAT TGGAATTACA
  TATAAATGTA GACATACCCT ACATTTGAGA GGTTATATTA TATAGATTTT TCAAAGTTTC
  TTTAGTAATT ACTGTGCATC ATACATGATT TCATCACCTT GGGGACATGG TCTCTCTGTG
  TCCATGTCCA GGATAGCTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20406105	PS02186249	PERLEGEN	MM_PANEL	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13490729					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:37609396 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9914	CpG island 9914	725 bp distal
Gm37388	predicted gene, 37388	within coordinates
Gm38666	predicted gene, 38666	within coordinates
Gm38667	predicted gene, 38667	within coordinates
Pcdha4b	protocadherin alpha 4B	within coordinates
Pcdhb15	protocadherin beta 15	3 bp downstream
Pcdhb16	protocadherin beta 16	1471 bp upstream
Tssr5286	transcription start site region 5286	1503 bp upstream
Tssr150708	transcription start site region 150708	1462 bp upstream