rs13490730 SNP Detail

Summary

• ID
  rs13490730
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:37609578 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGTAGAGA TTGTTTAAGC
  TGTTTTTCCA TATCTACATT TTTCATTTAT AATTATGTTC TGAGTCTATT GGAATTACAT
  ATAAATGTAG ACATACCCTA CATTTGAGAG GTTATATTAT ATAGATTTTT CAAAGTTTCT
  TTAGTAATTA CTGTGCATCA TACATGATTT CATCACCTTG GGGACATGGT CTCTCTGTGT
  Y
  CATGTCCAGG ATAGCTTTGA ACTTTTGATT TTCCTGCCCC AGACTTTCAA GTTGCAGCTA
  CCACAGGCCT CAGCCTATCG CCTTCTTTAT TTCAGAAGAA GCCAATAAGT GGCGGTATCT
  CAATGATGAG CAAGTAGAAG TTGGTAGAGA CTTGGTAAGA TCCATAATTA TTAACTGGCA
  GAGCAGAGCC AAACAATCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.D2-Hc<0> H2 H2-T18/oSnJ	C3H/HeJ	CAST/EiJ	NZW/LacJ	SPRET/EiJ
ss20406106	PS02186251	PERLEGEN	MM_PANEL	f	SNP	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	B10.D2-Hc<0> H2 H2-T18/oSnJ	C3H/HeJ	CAST/EiJ	NZW/LacJ	SPRET/EiJ
rs13490730					SNP	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:37609578 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9914	CpG island 9914	907 bp distal
Gm37388	predicted gene, 37388	within coordinates
Gm38666	predicted gene, 38666	within coordinates
Gm38667	predicted gene, 38667	within coordinates
Pcdha4b	protocadherin alpha 4B	within coordinates
Pcdhb15	protocadherin beta 15	185 bp downstream
Pcdhb16	protocadherin beta 16	1289 bp upstream
Rr536278	regulatory region 536278	1146 bp proximal
Rr536279	regulatory region 536279	1198 bp proximal
Rr536280	regulatory region 536280	1300 bp proximal
Tssr5286	transcription start site region 5286	1321 bp upstream
Tssr150708	transcription start site region 150708	1280 bp upstream