rs13490733 SNP Detail

Summary

• ID
  rs13490733
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:37610041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGCAGGT GACTTGGCAA
  CATTATGCTG TTTTCTATTA CTAGATATCA TGTGTCCTAC TCACATTGCT CATCAGCCTC
  TTCTGTATTC AGAAATAGCT ACACTCTGCT TAGCCTAGCC TGCAGCCTCA CTTCCTTATA
  AACTCACACA CACACACACA CACACACACA CCATTGGGAG TTTATTATCC AACTACTATT
  W
  AAGCTCTCAG TTAACTAAAT CTTAACGTCT AAAAGAGTTG AGTGTTGGGC ATGGTAAAAC
  GCACCTTTAA TCCCAATACT TGGGAGGCAG ATACAGGGGG AATCTCTGTG AATTTGGAAG
  CAGCCTGGTC TATGAAAGAG TTCCATGATA CCCAACGGCT ACATAGAGAG ACCTTGTCTC
  AGTAAGCAAG AGGAGATGGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20406109	PS02186256	PERLEGEN	MM_PANEL	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13490733					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:37610041 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9914	CpG island 9914	1370 bp distal
Gm37388	predicted gene, 37388	within coordinates
Gm38666	predicted gene, 38666	within coordinates
Gm38667	predicted gene, 38667	within coordinates
Pcdha4b	protocadherin alpha 4B	within coordinates
Pcdhb15	protocadherin beta 15	648 bp downstream
Pcdhb16	protocadherin beta 16	826 bp upstream
Rr536278	regulatory region 536278	683 bp proximal
Rr536279	regulatory region 536279	735 bp proximal
Rr536280	regulatory region 536280	837 bp proximal
Tssr5286	transcription start site region 5286	858 bp upstream
Tssr150708	transcription start site region 150708	817 bp upstream