rs13490736 SNP Detail

Summary

• ID
  rs13490736
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:37611132 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGACTGAA AGAATTCTCA
  GGTATCTGGT GAGATAACTA CAGTACCAGA TACTAGGGGT GTTTATAGTT CTGCTGAAAC
  ATCCTTCAGG ACTCTGTACC ACCAAGAACA ATGGAGGCCA GCAGGAAGCT CATTTGCAGA
  CAAAGGCAAG TCCTTTTTTT CTTTCTCCTA TTAGGCTTCC CTCTAACGAC TGCAGGGGAA
  Y
  TGAGGCGCTA TTCTGTGGTG GAGGAAAAGG AGGGTAGGTC CTTTGTAACC AATTTAGTAA
  AAGACCTGGG TCTTGGGCAG CTGGAACTCT CCCGGAGAGG AGCTAAGGTC ATTTCTAAAG
  GTAACAAACT ACATTTGCAG CTGGATCAGG AGACAGGGGA TTTGCTGTTA AATGAGAAAG
  TGGACAGGGA AAAACTGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20406112	PS02186261	PERLEGEN	MM_PANEL	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13490736					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:37611132 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9915	CpG island 9915	1370 bp proximal
Gm37388	predicted gene, 37388	within coordinates
Gm38666	predicted gene, 38666	within coordinates
Gm38667	predicted gene, 38667	within coordinates
Pcdha4b	protocadherin alpha 4B	within coordinates
Pcdhb15	protocadherin beta 15	1739 bp downstream
Pcdhb16	protocadherin beta 16	within coordinates
Tssr5286	transcription start site region 5286	223 bp downstream
Tssr150708	transcription start site region 150708	244 bp downstream