rs13490737 SNP Detail

Summary

• ID
  rs13490737
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:37611368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             AGGGAAAAAC TGTGTGGGCA TACAGAGCCA TGCTTGCTAA GCTTCCAAGT
  R
  TTGCTAGACA ACCCCTTGGA TATTTTTCAA GCTGAGCTAG AAGTCACAGA           
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
ss20406113	PS02186263	PERLEGEN	MM_PANEL	f	SNP		G	G	G		G		G		G	A					G		G	G		G
ss49274177	NES12728347	PERLEGEN	MM_PANEL2	f	SNP	G			G	G		G		G	G	A	G	G	G	A		G			G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
rs13490737					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49274177	NES12728347	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:37611368 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9915	CpG island 9915	1134 bp proximal
Gm37388	predicted gene, 37388	Intron
Gm38666	predicted gene, 38666	Intron
Gm38667	predicted gene, 38667	Intron
Pcdha4b	protocadherin alpha 4B	Intron
Pcdhb15	protocadherin beta 15	1975 bp downstream
Pcdhb16	protocadherin beta 16	Coding-Synonymous
Rr536278	regulatory region 536278	491 bp distal
Rr536279	regulatory region 536279	571 bp distal
Rr536280	regulatory region 536280	292 bp distal
Tssr5286	transcription start site region 5286	459 bp downstream
Tssr150708	transcription start site region 150708	480 bp downstream