rs13490738 SNP Detail

Summary

• ID
  rs13490738
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:37611558 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTCCAAGT GTTGCTAGAC
  AACCCCTTGG ATATTTTTCA AGCTGAGCTA GAAGTCACAG ACATAAATGA CCACTCACCA
  GAATTCCTGG ACAAAGAGAT CATGCTAAAG ATATCAGAAA GCAGTCTTCC TGGAGCTACA
  TTTCCTCTGA AGAATGCTCA GGACATGGAT GTAGGCCAAA ACGGTATTGA CAAGTATCTG
  R
  TCAGTTCCAA TTCCTATTTT CGAGTGCTCA CTCGGAAACG AAGCGATGGC AAGAAATACC
  CTGAACTGGT ACTAGACAGA GCACTGGATA GAGAGGAGGA AGCTGAGCTC AGGCTAACCC
  TCACAGCACA GGATGGTGGC TCTCTGCCTA GGTCTGGAAC CACTGAAGTC CACATTGAAG
  TCCTGGACAT CAATGATAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20406114	PS02186264	PERLEGEN	MM_PANEL	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13490738					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:37611558 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9915	CpG island 9915	944 bp proximal
Gm37388	predicted gene, 37388	within coordinates
Gm38666	predicted gene, 38666	within coordinates
Gm38667	predicted gene, 38667	within coordinates
Pcdha4b	protocadherin alpha 4B	within coordinates
Pcdhb16	protocadherin beta 16	within coordinates
Tssr5286	transcription start site region 5286	649 bp downstream
Tssr150708	transcription start site region 150708	670 bp downstream