rs13490739 SNP Detail

Summary

• ID
  rs13490739
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:37611635 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGAATTCC TGGACAAAGA
  GATCATGCTA AAGATATCAG AAAGCAGTCT TCCTGGAGCT ACATTTCCTC TGAAGAATGC
  TCAGGACATG GATGTAGGCC AAAACGGTAT TGACAAGTAT CTGATCAGTT CCAATTCCTA
  TTTTCGAGTG CTCACTCGGA AACGAAGCGA TGGCAAGAAA TACCCTGAAC TGGTACTAGA
  Y
  AGAGCACTGG ATAGAGAGGA GGAAGCTGAG CTCAGGCTAA CCCTCACAGC ACAGGATGGT
  GGCTCTCTGC CTAGGTCTGG AACCACTGAA GTCCACATTG AAGTCCTGGA CATCAATGAT
  AACGCTCCTC AATTTGAGCA GCTTTTTTAC AAAGCACAGA TCCCTGAGGA TAGTCCAATA
  GGCTTTCTGA TCATCACTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20406115	PS02186266	PERLEGEN	MM_PANEL	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13490739					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:37611635 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9915	CpG island 9915	867 bp proximal
Gm37388	predicted gene, 37388	within coordinates
Gm38666	predicted gene, 38666	within coordinates
Gm38667	predicted gene, 38667	within coordinates
Pcdha4b	protocadherin alpha 4B	within coordinates
Pcdhb16	protocadherin beta 16	within coordinates
Tssr5286	transcription start site region 5286	726 bp downstream
Tssr150708	transcription start site region 150708	747 bp downstream