rs13490930 SNP Detail

Summary

• ID
  rs13490930
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:192925818 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TCTGC CTTGTCATAA CGACACATTT
  K
  TAATTGCTAG AGTGTCTCTT GTCTT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20406308	PS02186597	PERLEGEN	MM_PANEL	f	SNP	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13490930					SNP	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:192925818 () rs orientation: reverse

Symbol	Name	Function Class
1600010F14Rik	RIKEN cDNA 1600010F14 gene	within coordinates
Hsd11b1	hydroxysteroid 11-beta dehydrogenase 1	within coordinates
Rr372662	regulatory region 372662	within coordinates
Tssr15848	transcription start site region 15848	1977 bp upstream
Tssr15849	transcription start site region 15849	1142 bp upstream
Tssr15850	transcription start site region 15850	1077 bp upstream