rs13490933 SNP Detail

Summary

• ID
  rs13490933
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:192925367 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              AGCTTATGAG CGAGCAGTGT
  GGCTATAGCC AAAGATGGTC TAGATCTTCT AGTCTGGCCT CCTTTTCTCA GCATCCTCTT
  CTGTTCCTCG CTGCTCCACA GCATTTGCAT AACCCAGTTT AACAACCTGC TGCCTTTCTT
  CCCGTTTTGG GGCCCATTGT TCCTTCTTCA TTCTCTGTTA AAGTAATAAG GGTGAGCTCC
  S
  TTGCACTTGC CTGAGAGTCT TGAACTGAGC TTGGGTTTCC CGCCATCTGG GTCTGGCTGG
  GTTGCAACTT CTCTTTGATG TTGTAATGCT TTTTCATTGA ACTGGAGTGT GGGGCTTATA
  TGGCTTGTTT GCTTTATTCT TTTTTCTCCT AAGACATGCA CATTTTTTTT CCCTTGAGCT
  TATTTTGCTG TTTTGTGTTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20406311	PS02186600	PERLEGEN	MM_PANEL	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13490933					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:192925367 () rs orientation: reverse

Symbol	Name	Function Class
1600010F14Rik	RIKEN cDNA 1600010F14 gene	within coordinates
D1Mit512	DNA Segment, Chr 1 Massachusetts Institute of Technology 512	1758 bp distal
Hsd11b1	hydroxysteroid 11-beta dehydrogenase 1	within coordinates
Rr372662	regulatory region 372662	within coordinates
Rr426486	regulatory region 426486	441 bp distal
Rr426487	regulatory region 426487	within coordinates
Rr426488	regulatory region 426488	616 bp proximal
Tssr15848	transcription start site region 15848	1526 bp upstream
Tssr15849	transcription start site region 15849	691 bp upstream
Tssr15850	transcription start site region 15850	626 bp upstream