rs13490937 SNP Detail

Summary

• ID
  rs13490937
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:192924086 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AAATC TCTGTGAACA CATTTTGTGA
  Y
  GCTCTTTTAA ATTCCCTTTC AAGTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	SM/J	SPRET/EiJ	WSB/EiJ
ss20406316	PS02186605	PERLEGEN	MM_PANEL	f	SNP		C	C	C	C	T	C	C		C	T	C	C			C		C	C		C
ss44946186	mCV27576404	ABI	CRAMUS_MOUSE	r	SNP				G							A		G
ss46776330	NES10634797	PERLEGEN	MM_PANEL2	r	SNP	A			G	G				A				G	G			G					G
ss146525868	ENSMUSSNP5310124	ENSEMBL	ENSEMBL_Sanger	r	SNP				G									G
ss320201226	CHEV_1_195067972	CHEVERUD	SCREENING_POP	r	SNP															G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	SM/J	SPRET/EiJ	WSB/EiJ
rs13490937					SNP	T	C	C	C	C	T	C	C	T	C	T	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46776330	NES10634797	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:192924086 () rs orientation: reverse

Symbol	Name	Function Class
1600010F14Rik	RIKEN cDNA 1600010F14 gene	within coordinates
D1Mit512	DNA Segment, Chr 1 Massachusetts Institute of Technology 512	477 bp distal
Hsd11b1	hydroxysteroid 11-beta dehydrogenase 1	within coordinates
Rr372662	regulatory region 372662	778 bp upstream
Tssr15848	transcription start site region 15848	245 bp upstream
Tssr15849	transcription start site region 15849	568 bp downstream
Tssr15850	transcription start site region 15850	648 bp downstream