rs13490938 SNP Detail

Summary

• ID
  rs13490938
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:192923939 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TTTTA GAAATGATAG CAGGATGGCT
  Y
  GGCTCTGGAC ATCCAGGCCA AACCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20406317	PS02186606	PERLEGEN	MM_PANEL	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13490938					SNP	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:192923939 () rs orientation: reverse

Symbol	Name	Function Class
1600010F14Rik	RIKEN cDNA 1600010F14 gene	within coordinates
D1Mit512	DNA Segment, Chr 1 Massachusetts Institute of Technology 512	330 bp distal
Hsd11b1	hydroxysteroid 11-beta dehydrogenase 1	within coordinates
Rr372662	regulatory region 372662	925 bp upstream
Tssr15848	transcription start site region 15848	98 bp upstream
Tssr15849	transcription start site region 15849	715 bp downstream
Tssr15850	transcription start site region 15850	795 bp downstream