rs13490940 SNP Detail

Summary

• ID
  rs13490940
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:192922767 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TCAGG AGGGAAAGGG GACAGGACTG
  R
  CTCCCGGTGG TCTTCCAAGT CAGCG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20406319	PS02186609	PERLEGEN	MM_PANEL	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13490940					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:192922767 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1600010F14Rik	RIKEN cDNA 1600010F14 gene			within coordinates
D1Mit512	DNA Segment, Chr 1 Massachusetts Institute of Technology 512			727 bp proximal
Hsd11b1	hydroxysteroid 11-beta dehydrogenase 1			Intron
				Noncoding-Transcript-Variant
Rr426486	regulatory region 426486			1782 bp proximal
Tssr15848	transcription start site region 15848			1048 bp downstream
Tssr15849	transcription start site region 15849			1887 bp downstream
Tssr15850	transcription start site region 15850			1967 bp downstream