rs13491291 SNP Detail

Summary

• ID
  rs13491291
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:192807363 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              CATAAAACCA GCTGTGGTGG
  TATGTGCCTC TAATTCTATC ACTTGGTGAA GGTAGAAGCA GGAGGACCTA GTCTTGCAGT
  ACTGGACATT GGACTTAGTG CCTCCTACCT ATGCTTTGCT ACTGAGTTCT GTCCTTAGAC
  TGGACCTTTT TCTCTGTAAC GTAACTCTGG ATTCACATTA GTTTCTTGGA TGTATAACAC
  W
  CACTATTGAA TAATCCTTTG ACAGACATTT CAGTTGTTCC ATGTTATTTC TTATCATAAT
  TCAGGCTGCT CTCAACATCT TTCATTTATA TCTTGGTGTA GTATTTTAGA GTAAGTTCTA
  GAACTGGGTA TTTTAGAATT CTCCACGGTA ACTTCTAATT ATGATAGAAA TCTATTTTAA
  GGAATTGGCT CATGTGATTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20406677	PS02187223	PERLEGEN	MM_PANEL	f	SNP	A	A	A	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13491291					SNP	A	A	A	A	A	A	A	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:192807363 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr367086	regulatory region 367086			1989 bp downstream
Rr426453	regulatory region 426453			997 bp proximal
Utp25	UTP25 small subunit processome component			Intron
				Noncoding-Transcript-Variant